Story Mode was the original content for ''Magic The Gathering: PuzzleQuestPuzzle Quest''. It is where all players start out and is a good way to learn the mechanics of the game and earn some basic rewards to prepare for [[Events]].

Prizes Rewards are handed out earned for the initial win, for winning once with every color, and for winning with different optional objectives. Winning with a colorless planeswalker does not advance the "win with every color" objective.

* All battles in [[Origins - Chapter 1, Part 1 ]] must be completed once beaten using [[Nissa, Sage Animist]] to unlock before the [[Events]] and [[Coalition]] sections of the gamecontent is unlocked for a new player.* Every level must be played a minimum of two times to collect all rewards to get wins with all five colors. To do this, you would meet the two optional objectives in addition to using a three color R/B/U walker (for example, [[Nicol Bolas, God-Pharaoh]] or [[Nicol Bolas, the Ravager]]) on one run and an opposing two color G/W walker ([[Ajanifor example, Unyielding]] or [[Huatli, Radiant Champion]]) to meet all five color objectives. Note that colorless walkers do not reward any color completion credit at all in Story mode.