The Origins Story level introduces players to the game and rewards the player through the tutorial. It is broken up into three chapters of two parts each. Each chapter has a varying number of battles.
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Each battle has four Objectives, three of which are listed at the start, and all of which give Resources as Rewards. Winning earns mana runes and opens up the next battle for play - this is the unlisted objective. Winning a given battle once with a Planeswalker of each of the five colors earns 10 Mana Crystals. A second objective earns mana runes, and the final objective earns 15 Mana Crystals. Dual and tri-color walkers count each of their colors towards the "win" objective, so all five colors can be won in two games: one three color PW, and a dual or three color PW that covers the remaining colors.
As of July 2022, "kill X enemy creatures" objectives can be completed by Destroying the player's own creatures.
| Chapter | Set | Battles | Opponent Level |
|---|---|---|---|
| Origins - Chapter 1, Part 1 | Origins | 16 | 3-12 |
| Origins - Chapter 1, Part 2 | Origins | 12 | 13-19 |
| Origins - Chapter 2, Part 1 | Origins | 14 | 20-28 |
| Origins - Chapter 2, Part 2 | Origins | 13 | 28-36 |
| Origins - Chapter 3, Part 1 | Origins | 12 | 36-43 |
| Origins - Chapter 3, Part 2 | Origins | 12 | 43-50 |